PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.PNX61 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 34840.8 Da PI: 5.8025 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.4 | 1.1e-26 | 24 | 167 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppG+rFhP++e l+ +yL++k + + ++ ++ i+e+d y+++P +Lp + +++++wy F++ + + + +++r++ksg+W Araip.PNX61 24 LPPGCRFHPSEELLLRYYLTNKNGTGNwngngglgFDGSDLIRELDFYDYDPFELPDfacfayGYGGRRRHWYCFTSVRVSRGERWKRKRKVKSGFWL 121 79********************9999988888888777789***************44777654445777******9999999988999999****** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 g+ +v ++ + g+++ +vfy g +a++g +tdWv+ ey+l Araip.PNX61 122 RRGRVSNVNGVgENVVLGTRTRFVFYMGdSAKNGARTDWVLYEYAL 167 ********998566679*********987899************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-31 | 20 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.396 | 24 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-16 | 25 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MEQEEEPQQN EPPHSHSQSR CVTLPPGCRF HPSEELLLRY YLTNKNGTGN WNGNGGLGFD 60 GSDLIRELDF YDYDPFELPD FACFAYGYGG RRRHWYCFTS VRVSRGERWK RKRKVKSGFW 120 LRRGRVSNVN GVGENVVLGT RTRFVFYMGD SAKNGARTDW VLYEYALVDH VMASYVLCRV 180 FSKPRYKNSA SDIGLSCCAE ESVSAVRHIG IQHDEHVKLD AVEAKVCDDI SIDHNNEICA 240 GGNSDNDNQV KNAHDIDALR CLAGPQGSQQ ERLPLLPSSS TMFIEAISSP QQLLSITEED 300 FIELNDLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-18 | 22 | 183 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-18 | 22 | 183 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-18 | 22 | 183 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-18 | 22 | 183 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-18 | 22 | 183 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-18 | 22 | 183 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-18 | 22 | 183 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 112 | RRRHWYCFTSVRVSRGERWKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.PNX61 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016163090.1 | 0.0 | NAC domain-containing protein 76 isoform X4 | ||||
Refseq | XP_025606940.1 | 0.0 | NAC domain-containing protein 71-like isoform X4 | ||||
Refseq | XP_025660341.1 | 0.0 | NAC domain-containing protein 71-like isoform X4 | ||||
TrEMBL | A0A444YWF3 | 0.0 | A0A444YWF3_ARAHY; Uncharacterized protein | ||||
STRING | XP_007160867.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 2e-18 | NAC domain containing protein 50 |