PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.PA2K4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 103aa MW: 12028.1 Da PI: 11.2679 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss Araip.PA2K4 9 KRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 39.1 | 3.3e-14 | 61 | 97 | 48 | 84 |
K-box 48 lkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +eLq+LeqqL+ slk+iR +Kn+++ ++i+el k+ Araip.PA2K4 61 SRELQSLEQQLDASLKRIRIRKNQVMNQSISELNKRV 97 68********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.258 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.31E-33 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 9.68E-30 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.233 | 12 | 103 | IPR002487 | Transcription factor, K-box |
PRINTS | PR00404 | 1.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.0E-11 | 60 | 98 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MGRGRVQLKR IENKTSQQVT FSKRRTGLLK KAHEISVLCD AQVALIMFST KGKLFEYSSE 60 SRELQSLEQQ LDASLKRIRI RKNQVMNQSI SELNKRVRFC VVW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 4e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 4e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 4e-19 | 1 | 59 | 1 | 59 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.PA2K4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098571 | 2e-57 | BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773500.1 | 5e-43 | agamous-like MADS-box protein AGL8 homolog isoform X3 | ||||
Swissprot | D7SMN6 | 1e-32 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A0B2PGI7 | 8e-45 | A0A0B2PGI7_GLYSO; Agamous-like MADS-box protein AGL8 | ||||
STRING | Gorai.012G185500.1 | 6e-40 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-31 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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