PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.P4GTD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 25641.5 Da PI: 8.9574 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.5e-08 | 22 | 73 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54 +E++RR++++ +++L llP + + +s+K l + + kA++YIk+L Araip.P4GTD 22 RRLIEKKRRKHMRMLYSKLNALLPIDHNSTSPKevLPLPDQVDKAINYIKNL 73 5689*********************6666666668***************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.23E-9 | 15 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-4 | 17 | 73 | No hit | No description |
PROSITE profile | PS50888 | 11.033 | 17 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-8 | 18 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-5 | 23 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MDQLGSRSEA SPSSTNDKKI ERRLIEKKRR KHMRMLYSKL NALLPIDHNS TSPKEVLPLP 60 DQVDKAINYI KNLKKKVKMA KEKRESLLGM GRKRTRDAGS RRDRPKPPQL EVHEMGSYLQ 120 IVMTCGLDSQ FIFSEIIRIL NEENIDVKSV KSSLVENSMH HVIYAEISQS LLQLGATKVS 180 ERLKRFVNEP TSEIELQSDH QLLDFEIDTD ELAELLDFLE EK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 26 | 30 | KKRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.P4GTD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025641085.1 | 1e-161 | transcription factor bHLH162-like | ||||
TrEMBL | A0A445A4W9 | 1e-159 | A0A445A4W9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G44660.2 | 2e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-17 | bHLH family protein |