PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.NAY2X | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 42248.8 Da PI: 8.6842 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk Fs+ L H r H Araip.NAY2X 62 ECEFCGKKFSSGKALGGHKRFH 83 5**************9999988 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 306 | 328 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F + +L+ H ++H Araip.NAY2X 306 FQCNICDEYFATFQSLRGHRSNH 328 89******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.118 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.9E-6 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.25E-9 | 126 | 149 | No hit | No description |
PROSITE profile | PS50157 | 10.118 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-5 | 129 | 150 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.25E-9 | 301 | 328 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 303 | 332 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.042 | 306 | 328 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.7E-7 | 306 | 330 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.177 | 306 | 333 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 308 | 328 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTVKKFSFSF HCRRYNHTSS IIIKTILKAI EFQPDEPVMK KSFKLIDSMD TNEKPVTPPM 60 RECEFCGKKF SSGKALGGHK RFHLQLLRKE RESANKLAVT SDNYGGGNDR GSNIKLLSSL 120 DSPNKKLLCC LCNKEFLSEK SLFGHMRSHP GREWKGIHPP NDDDDNGLME PAVVSPIPSL 180 SSPSIDISKS LPPSWLKTGI RGKKGIFDEI LGGVVAIMVD KSHENNKSSF DLQSRAKIEH 240 DYGDREKEKE GDLVKEGCNL KKRKRILSNN MNDEITTNKK NTKLIVRLKT RPQCEEDDGS 300 SAEKGFQCNI CDEYFATFQS LRGHRSNHNK EKKSKSHKDL ENTTEESSEP SSKILREFDL 360 NELPENNNIE DGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.NAY2X |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016191502.1 | 0.0 | uncharacterized protein LOC107632321 | ||||
Refseq | XP_025637016.1 | 0.0 | uncharacterized protein LOC112732487 | ||||
TrEMBL | A0A445C496 | 0.0 | A0A445C496_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 6e-16 | C2H2 family protein |