PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.N9N0A

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 282aa MW: 30320.2 Da PI: 7.8146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.N9N0A	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.2	2.8e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C++apyfpa++p++f++vh++FGasnv k+l++l++++reda++sl+++A+ar+r+PvyG++ ++ lqq l+q +a l+ +k Araip.N9N0A 7 SCAACKFLRRKCTPECIFAPYFPANDPERFECVHRVFGASNVGKILNELHPSQREDAVKSLAFQAKARLRNPVYGCTFQVSILQQLLRQRRAVLENAK 104 6*****************************************************************************************99999888 PP DUF260 99 ee 100 +e Araip.N9N0A 105 RE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.916	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSSTPTSCAA CKFLRRKCTP ECIFAPYFPA NDPERFECVH RVFGASNVGK ILNELHPSQR 60 EDAVKSLAFQ AKARLRNPVY GCTFQVSILQ QLLRQRRAVL ENAKRELSAY INPPAIQGPF 120 NPQEKPLTSP PVHLGPPCGS NVVQYSAHLD PSYDPNVVHS SAHLGLSNAM QHNRSLGGGG 180 AVPQPDPWLQ ELLEAQQLAA AVAFREQQQE YLRHNAAAGI EPVATAAPYG GNVSGSGVFG 240 HMGAPSGGQG GEMAPCMGLG TFDSGGSYHP QLQQPPQHGV WH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-38	8	110	12	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-38	8	110	12	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.N9N0A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020973847.1	1e-177	LOB domain-containing protein 6-like isoform X1
Refseq	XP_020973852.1	1e-177	LOB domain-containing protein 6-like isoform X2
Refseq	XP_025627928.2	1e-177	LOB domain-containing protein 6-like
Swissprot	Q9FKZ3	3e-45	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A444ZG76	0.0	A0A444ZG76_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-44	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]