PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N1GGK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 136aa MW: 15107.8 Da PI: 6.7372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.7 | 8.5e-11 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k +G g + R++k+c++rw +yl Araip.N1GGK 14 KGAWTKEEDQRLINYIKIHGEG----------LLRCGKSCRLRWINYL 51 79******************99..........689***********97 PP | |||||||
2 | Myb_DNA-binding | 21.6 | 5.1e-07 | 57 | 78 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 rg++T+eEdel+++++ +lG++ Araip.N1GGK 57 RGNFTEEEDELIINLHSLLGNN 78 89******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-16 | 5 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.186 | 9 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-7 | 13 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-9 | 14 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.19E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.23E-8 | 16 | 51 | No hit | No description |
PROSITE profile | PS50090 | 4.832 | 52 | 97 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-10 | 55 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4 | 56 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDQRLINYIK IHGEGLLRCG KSCRLRWINY LRPDLKRGNF 60 TEEEDELIIN LHSLLGNNTN IINDNNNNKF QLVSDLVCED SSNSSSGFQS NNNKVCSCKG 120 AIVGGTAVTT TAADNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-16 | 13 | 77 | 26 | 99 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N1GGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034672 | 3e-32 | KM034672.1 Jatropha curcas clone JcMYB052 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169145.2 | 9e-48 | myb-related protein 308 | ||||
Refseq | XP_025673277.1 | 1e-47 | myb-related protein 308 | ||||
Refseq | XP_028766124.1 | 7e-48 | transcription repressor MYB6-like | ||||
Refseq | XP_028785141.1 | 6e-48 | transcription repressor MYB6-like | ||||
Swissprot | P81395 | 5e-46 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A1R3GSF4 | 5e-47 | A0A1R3GSF4_COCAP; Uncharacterized protein | ||||
STRING | XP_006466200.1 | 1e-46 | (Citrus sinensis) | ||||
STRING | XP_002513249.1 | 4e-47 | (Ricinus communis) | ||||
STRING | XP_006426418.1 | 9e-47 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28707 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-44 | myb domain protein 4 |
Publications ? help Back to Top | |||
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