PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MXD2U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 871aa    MW: 95388.8 Da    PI: 6.5041
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MXD2UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.8e-182280357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Araip.MXD2U 22 KYVRYTAEQVEALERVYIECPKPSSLRRQQLIRDCpilaNIEPKQIKVWFQNRRCREKQ 80
                 56789****************************************************97 PP
2START1601.8e-501713782204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +++
  Araip.MXD2U 171 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYTQ 267
                  7899******************************************************.7777777777***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae++pSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Araip.MXD2U 268 TYAPTTLAPaRDFWTIRYTTTLENGSLVVCERSLSGSGTGPNaaaAAQFVRAEMRPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 365
                  ***********************************98888888999**************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Araip.MXD2U 366 AQKMTIAALRYIR 378
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-161784IPR009057Homeodomain-like
PROSITE profilePS5007115.0461781IPR001356Homeobox domain
SMARTSM003895.2E-141985IPR001356Homeobox domain
CDDcd000861.90E-142282No hitNo description
PfamPF000462.8E-152380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-172480IPR009057Homeodomain-like
CDDcd146861.86E-674113No hitNo description
PROSITE profilePS5084826.564161389IPR002913START domain
CDDcd088754.82E-70165381No hitNo description
Gene3DG3DSA:3.30.530.201.2E-19170370IPR023393START-like domain
SuperFamilySSF559611.79E-33170382No hitNo description
SMARTSM002349.7E-42170380IPR002913START domain
PfamPF018529.3E-48171378IPR002913START domain
PfamPF086709.4E-43738870IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MAVAQHHHRE SSIDKHLDSS GKYVRYTAEQ VEALERVYIE CPKPSSLRRQ QLIRDCPILA  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK QVSQLVCENG  120
YMKQQLHTVS LSASLQPSAA TTDASCDPVV SSSTTQQSMR DANSPAGFLS IAEETLAEFL  180
SKATGTAVDW VQMPGMKPGP DSVGIFAISQ SCSGVAARAC GLVSLEPTKI AEILKDRPSW  240
FRDCRSLEVF TMFPAGNGGT IELVYTQTYA PTTLAPARDF WTIRYTTTLE NGSLVVCERS  300
LSGSGTGPNA AAAAQFVRAE MRPSGYLIRP CEGGGSIIHI VDHLNLEAWS VPEVLRPLYE  360
SSKVVAQKMT IAALRYIRQI AQETSGEVVY GLGRQPAVLR TFSQRLSRGF NDAVNGFNDD  420
GWSVLNCDGA EDVIIAVSST KNFSGTSNPA SSLTFLGGIL CAKASMLLQN IPPAVLVRFL  480
REHRSEWADF NVDAYSAASL KSGSYAYPGM RPTRFTGNQT IMSLGHTIEH QEMLEVIRLE  540
GHSLAQEDAF ASRDVHLLQL CSGIDENAVG ACSELIFAPI DEMFPDDAPL LPSGFRIIPL  600
DSKPGDKKDS MTGSQTLDLT SGFEVGPTTN GARDAVSCHS ARSVLTIAFQ FPFDSSLQDN  660
VAVMARQYIR SVISSVQRVA MAISPSGINP AIGSKLSPGS PEALTLANWI CCSYRQVCIC  720
LSNAALHFFV LFSSKNSYYL GAELLRSDSL IGESVLKHLW QHQDAILCCS LKSVPVFIFA  780
NQAGLDMLET TLVALQDITL DKIFDESGRK ALFADFAKLM QQGFAYLPAG ICMSTMGRHV  840
SFEQAIAWKV LAEEDNSVHC LAFSFVNWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MXD2U
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016170485.10.0homeobox-leucine zipper protein REVOLUTA isoform X1
RefseqXP_025670948.10.0homeobox-leucine zipper protein REVOLUTA isoform X1
RefseqXP_029150887.10.0homeobox-leucine zipper protein REVOLUTA isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A444Y8140.0A0A444Y814_ARAHY; Uncharacterized protein
STRINGXP_007132262.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]