PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.MGE63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 276aa MW: 30769.2 Da PI: 8.0111 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 103.6 | 4.2e-32 | 16 | 138 | 2 | 120 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 ++ s+++q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ + + hl +s+ + llee +++ ++ ++++++ + ++ Araip.MGE63 16 QLSSNTDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSSNQLHLPHSFFTPqnLLEEIRNAPSSNMMMNHHQLPNPNDLM 113 567899****************************************9888877777777777788765434666666665543333333333333333 PP YABBY 98 sekl.senedeevprvpp.virPPe 120 ++++ + d+e+p++ p + r P Araip.MGE63 114 MSNIrGGSIDQETPKPTPpAARRPK 138 3333455666777765443555554 PP | |||||||
2 | YABBY | 120.8 | 2.1e-37 | 165 | 217 | 118 | 170 |
YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Araip.MGE63 165 APEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 217 59*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-63 | 20 | 217 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-7 | 162 | 211 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-4 | 166 | 209 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSASSTSSFS PDQQQQLSSN TDQLCYVHCN FCDTVLAVSV PCTSLFKTVT VRCGHCTNLL 60 SVNMRGLLLP SSNQLHLPHS FFTPQNLLEE IRNAPSSNMM MNHHQLPNPN DLMMSNIRGG 120 SIDQETPKPT PPAARRPKRV SNVIFNVGVC LPVAMLSIVC FHCPAPEKRQ RVPSAYNRFI 180 KDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD HQPVKKANVR QHSFDVVIEV 240 LGWPNTAILQ HDHQEAEDVL MKDGFFSPAN VGVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.MGE63 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098301 | 4e-76 | BT098301.1 Soybean clone JCVI-FLGm-12E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950611.1 | 1e-147 | axial regulator YABBY 1 | ||||
Refseq | XP_016184129.1 | 1e-147 | axial regulator YABBY 1 | ||||
Refseq | XP_025634037.1 | 1e-147 | axial regulator YABBY 1 | ||||
Refseq | XP_025657301.1 | 1e-147 | axial regulator YABBY 1 | ||||
Swissprot | O22152 | 4e-83 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A445E9N2 | 1e-145 | A0A445E9N2_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445E9Q6 | 1e-145 | A0A445E9Q6_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445EA40 | 1e-146 | A0A445EA40_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G33370.1 | 1e-121 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-82 | YABBY family protein |