PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M9JCH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 402aa    MW: 46177.3 Da    PI: 8.9471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M9JCHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-06122146123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+  dC  s++rk++L+rH+  H
  Araip.M9JCH 122 YVCTvdDCQASYRRKDHLTRHLLQH 146
                  99*******************9887 PP
2zf-C2H210.90.0015151176123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kCp  +C+  Fs k n+ rH +  H
  Araip.M9JCH 151 FKCPmdNCNLIFSIKGNMARHVKEiH 176
                  89********************9988 PP
3zf-C2H219.72.4e-06190214123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp   Cgk+F+  s L++H  +H
  Araip.M9JCH 190 FVCPetGCGKVFKFASKLRKHEDSH 214
                  89*******************9888 PP
4zf-C2H215.16.6e-05294319123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kC+   C+  Fs+ksnL++H ++ H
  Araip.M9JCH 294 FKCEfkGCSCKFSSKSNLVTHKKVvH 319
                  89********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355272447IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.64E-7116148No hitNo description
Gene3DG3DSA:3.30.160.603.1E-11117148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024122146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097122151IPR007087Zinc finger, C2H2
PROSITE patternPS000280124146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-6149177No hitNo description
Gene3DG3DSA:3.30.160.608.3E-5149177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0076151176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162151181IPR007087Zinc finger, C2H2
PROSITE patternPS000280153176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-8188216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034190214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471190214IPR007087Zinc finger, C2H2
PROSITE patternPS000280192214IPR007087Zinc finger, C2H2
SMARTSM003554.3236261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238261IPR007087Zinc finger, C2H2
SMARTSM0035526264285IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6275316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.99E-9275330No hitNo description
SMARTSM003550.0041294319IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256294324IPR007087Zinc finger, C2H2
PROSITE patternPS000280296319IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-5318348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.1325351IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280327351IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MPEIQMDEPM ESGERPVFKD IRRYFCEYCG ICRSKKILIT SHINSQHKLE LKEIMKHIAK  60
SPTTLANNVV LASKNLPTCC STCKAIHLSI IGLDGLVSGR ETSCEAPSRM PQSRFIQDER  120
PYVCTVDDCQ ASYRRKDHLT RHLLQHEGKT FKCPMDNCNL IFSIKGNMAR HVKEIHDEGS  180
TSTNVESKQF VCPETGCGKV FKFASKLRKH EDSHGKFSSN LIFFVNNQIK LQSVDVVCLE  240
PGCMKHFTNN QCLKEHIESC HQYVTCDTCG SRQLKKNIKR HLRTHEADKS LAEFKCEFKG  300
CSCKFSSKSN LVTHKKVVHF KEKPFVCGFP DCGLRFAYKH VRDKHEKTGK HVFTHGNFEE  360
ADEQFRSRPR GGRKRVCPTV EMLVRKRVTP PSQLENLLFM QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-131083488183Aart
2i13_B3e-131083488183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M9JCH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183085.10.0transcription factor IIIA isoform X1
RefseqXP_025626937.10.0transcription factor IIIA
SwissprotQ84MZ41e-114TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A445EWZ00.0A0A445EWZ0_ARAHY; Uncharacterized protein
STRINGXP_007142319.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-106transcription factor IIIA