PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M4TVL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 323aa    MW: 36670.2 Da    PI: 6.4003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M4TVLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11140191155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rr++h ++Er+RR+++N+ ++ L++l+ ++   + ++ + a+i   A++++k+L+
  Araip.M4TVL 140 RRMTHIAVERNRRRQMNEHLSVLKSLMHPS---YIQRGDHASIIGGAIDFVKELE 191
                  8****************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-12138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-15138207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-10139195No hitNo description
PROSITE profilePS5088814.526139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-7145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MERLQLQGPL DSSLFGEHLE VNCLEQGFVD RESNFKVKED EHEEQTLISS LEGNMPFLQM  60
LQSVESPPFS PFKDPNFQAL LRPQHLKKPW EGTPYIPTLE SEINEFEQYT RSGSDAAWAN  120
KKTNSQHKDT RLSKHHHQER RMTHIAVERN RRRQMNEHLS VLKSLMHPSY IQRGDHASII  180
GGAIDFVKEL EQLVETLEAQ RRMRNKEEED GGMRSSASSS RKEEASGGNE AKAERRSKVG  240
GIEVSVIQSH VNLRIQCEKR AGLLINAIVA LENLRLPILH LNITSSDSSV LYSFSLKIEE  300
DSKLGSANEI AEAVDKILTS LTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140151RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M4TVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020959872.10.0transcription factor bHLH70
SwissprotO810372e-68BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A445CPN20.0A0A445CPN2_ARAHY; Uncharacterized protein
STRINGGLYMA07G05500.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.17e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]