PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.LI4LD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 327aa MW: 35810.9 Da PI: 7.5981 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.7e-19 | 174 | 228 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Araip.LI4LD 174 RKKLRLTKEQSALLEDSFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 228 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 3.9e-40 | 174 | 263 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLE+sF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Araip.LI4LD 174 RKKLRLTKEQSALLEDSFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 263 69*************************************************************************************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 159 | 224 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-18 | 164 | 231 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 170 | 230 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-16 | 172 | 234 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-17 | 174 | 231 | No hit | No description |
Pfam | PF00046 | 3.2E-16 | 174 | 228 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 205 | 228 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.5E-25 | 230 | 273 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.6E-10 | 230 | 264 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGLHHDSTHN NNNIGLHLVL GLALSSSSDS PTQETITTST KIPPYSSSST VTTDDAELLL 60 PSLTLALSGH DVNKNKNDDT QEHHRVQVVP TKANNNKVYS SEDYPSTGDV SAQNSPHHSA 120 VSSFSSGCRR GVKRERDVSA SDEAEAEATE IERLSSRISD EEEDGGTTAS AAARKKLRLT 180 KEQSALLEDS FKQHSTLNPK QKQALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK 240 KCCETLTDEN RRLQKELQEL KALKLSQPLY MPPMPAATLT ICPSCDRAVA IGSGGSASNN 300 IKNTPLISLA PKPHHFFSPF TNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 230 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.LI4LD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186424.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Refseq | XP_025627360.1 | 0.0 | homeobox-leucine zipper protein HAT22 isoform X2 | ||||
Swissprot | P46604 | 5e-82 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A445ARE6 | 0.0 | A0A445ARE6_ARAHY; Uncharacterized protein | ||||
STRING | XP_004509044.1 | 1e-108 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-69 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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