PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.L9HT2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 34844.4 Da PI: 5.9872 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 8.9e-10 | 179 | 223 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Araip.L9HT2 179 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 223 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-15 | 172 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-15 | 176 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-7 | 179 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MANRHPSEAP AADDFLEQIL GLPNFASADS TLAGGTGASS LAAAAAAAAA SPAAPMMLQL 60 SSDDASAAYL VGATAGGGFH PSPVYELGLS LEQGNGGGFL KPEDASGSGK RFRDDVVDGR 120 VKNGEPWHNV EIAGLQPESR MKARVFHGQP MPTTVPAAPH PPGMRPRVRA RRGQATDPHS 180 IAERLRRERI AERIRALQEL VPSVNKTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA 240 VAPLVTDIPL SSVEEEGGEG RNQPAWEKWS NDGTERQVAK LMEENVGTAM QFLQSKALCI 300 MPISLASAIY QSQPPDTSSI VKPETNPPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 188 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.L9HT2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182857.1 | 0.0 | transcription factor UNE12 isoform X1 | ||||
Refseq | XP_025632324.1 | 0.0 | transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 1e-125 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A445AEH1 | 0.0 | A0A445AEH1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G34360.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5449 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-117 | bHLH family protein |
Publications ? help Back to Top | |||
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