PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L92K3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 917aa    MW: 103992 Da    PI: 6.7923
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L92K3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.12.1e-16489565176
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 
                  +fYn+YA++ GFs rk++s+ks r g  + ++fvC +eg+r +++    + +r++++etr+gC a ++++ +  +g+w
  Araip.L92K3 489 EFYNRYARTRGFSARKNRSRKS-RAGALKLKNFVCHREGFRLQNSYCiGNLKRKPTPETRCGCSALMEIRVDApSGRW 565
                  6********************9.7777**************99988777899******************99888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.853290320IPR002885Pentatricopeptide repeat
PfamPF015350.66297319IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.021321351IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.3E-4323350IPR002885Pentatricopeptide repeat
PfamPF015351.1E-6323350IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.432355390IPR002885Pentatricopeptide repeat
PfamPF031012.4E-13489565IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.262629677IPR007527Zinc finger, SWIM-type
SMARTSM005750.001652679IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MFTSAVKISI HVLPGNSLPP RVSRKTEGSI FAFSMTESAD RTFSAATFLG GDTDSSFLRV  60
CEEWRQTQGA AASDACCGGE SRRTRDRAEE EDEKLAFKGD WKPNSALPFL TKPYRYALQS  120
QFATIARTQN SLAASLSFIP ASAAAPCVRR RSLRPPPLPA SAAAPCVRRR SLRPPPLPAS  180
AAAPCVRRRS LRPPPLPASA AAPCVRRRSL RPPPLPASAA APCFRRRRAG LCLNAWRLRA  240
LIRIDPSGFL ETLLGNEFPG RTWMLIFTAE FENLKWSSEL VSLERPASWL EKVKTDLIDM  300
YAKCGSVRVA RALFEMLREE IVVSWNAIIT GYAMHGLAKE ALELFEVMRT EARPDLITFV  360
GVLAACSRGL LLNEGHAFYD MMMRDYGINP TVQHYTCMEV MGQEFSHEGV NSEHTSYDQY  420
EQEEEKYEEV DVDYMDEDDT SVELMFDYHG FDEGYNIDSL EDIGMIEFWN IRDEDVCHFH  480
FSDVDIAFEF YNRYARTRGF SARKNRSRKS RAGALKLKNF VCHREGFRLQ NSYCIGNLKR  540
KPTPETRCGC SALMEIRVDA PSGRWWKEVQ ADLASVNGRP SLQTCFQQLE RSAANVYTLS  600
IFHMFQPILV RAASMKVINM RQTGSYVIYS VALDRTPNET WRVFCCDIEM EFNCSCMRME  660
SFGIPCEHII CVLVHEDIEE LPRSLVLPRW TKTAKVSFQN ARGLHWDSLM LSQYGCLMDW  720
FRQLANFACR DNERFIFIRE MAMNLLKQFK EEDAAQKELV NDADSVRDGV QVDNSGAGLA  780
TNDLGHSMPR DPRKCRTKGG ASQFNKRKHR CGQCGMEGHN RTTCRVRRGI SQSEGWGNDS  840
DDHMNIEDDS LVYDENASYS SNEVMFFLEA IRMDERLSST LDQHLVCPIV TPSPMFVQKD  900
GNLRVLEEEG LAKASEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205227RRRSLRPPPLPASAAAPCFRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L92K3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020979451.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025652524.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Z5470.0A0A444Z547_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2917722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.27e-17FAR1-related sequence 3