PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L8YHH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 195aa    MW: 21957.5 Da    PI: 9.6559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L8YHHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-0975122455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Araip.L8YHH  75 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGKALVLDEIINYVQSLQ 122
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1769136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-1069126No hitNo description
Gene3DG3DSA:4.10.280.104.1E-1771132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.64371121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-775122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1077127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MADNKRKTTS NSSSFNNNKE LSAGREGRSS KKQRKSNNGG SGVKKGEEKE KEEAPTATAT  60
GYIHVRARRG QATDSHSLAE RVRREKISER MKMLQRLVPG CDKVTGKALV LDEIINYVQS  120
LQNQVEFLSM KLASVSPFFF DFAMDLDNDN NNGHLVRPLD QYTGGQFWEV EEDQRQKQLL  180
HPYGLGSNLV GQHNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L8YHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312523e-79KT031252.1 Glycine max clone HN_CCL_23 bHLH transcription factor (Glyma04g37690.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193508.11e-97transcription factor bHLH137-like
RefseqXP_025637498.15e-97transcription factor bHLH48
SwissprotQ93W881e-52BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A444ZYB31e-95A0A444ZYB3_ARAHY; Uncharacterized protein
STRINGXP_007159982.15e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]