PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L8U1N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 369aa    MW: 42662.5 Da    PI: 9.0481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L8U1NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05121144123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C  Cg+ F +++ L++H +  H
  Araip.L8U1N 121 HVCRVCGRKFYTNEKLVNHFKQlH 144
                  79*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.6E-788145IPR029060PIN domain-like
PROSITE profilePS5015711.489121149IPR007087Zinc finger, C2H2
PROSITE patternPS000280123144IPR007087Zinc finger, C2H2
CDDcd061675.46E-11187274No hitNo description
PfamPF019361.1E-6193274IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10108.6E-7196280IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCSILKFRSI YGSFKFFHSK LNRGSSASDK TSKLEPNRNN HNRVGIFWDL DNKPPNPIPP  60
YEVANKLRIV ASSFGVVRHM VAYANSHTFS SVPHAVRQRR KEKELYNRLE SKGVIKRNEP  120
HVCRVCGRKF YTNEKLVNHF KQLHESEQTK RVNQIASARG SRRVKLVAKY SMKMEKYKKA  180
ARDILTPRVG YGLADELKRA GFWVQTVLDK PQAADRALES HMVDMMDHRR VECIVLVSDD  240
YDFANVIREA KLRCLKTVVI GDTSDGVLKR IADTSFSWEE ILMGKAKKEA VSVVENWKDR  300
DILKRLEWTY NPEVDKKKYD PADVVIEESE DENIEDICDD VDDDYKDGGG AWWELDSDEN  360
VTNEQTRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L8U1N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020971347.10.0uncharacterized protein LOC107625141
RefseqXP_025632659.10.0uncharacterized protein LOC112727205
TrEMBLA0A445EDZ50.0A0A445EDZ5_ARAHY; Uncharacterized protein
TrEMBLA0A445EEQ20.0A0A445EEQ2_ARAHY; Uncharacterized protein
STRINGGLYMA11G36770.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-138C2H2 family protein