PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L6TM2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 599aa    MW: 67821.9 Da    PI: 4.208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L6TM2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-11544594148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      ++rW++ E+  l  av+q+G g+Wk+I +t     + Rt+ ++k++w++++
      Araip.L6TM2 544 KKRWSEFEEITLRSAVNQYGEGNWKLILSTHIdvfEERTDVDLKDKWRNLK 594
                      68*************************988777**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.032539598IPR017930Myb domain
SuperFamilySSF466892.5E-13541594IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-12541595IPR009057Homeodomain-like
SMARTSM007176.7E-6543596IPR001005SANT/Myb domain
PfamPF002491.9E-8544594IPR001005SANT/Myb domain
CDDcd116602.86E-15545595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MGTEITALKR IYVYRCMKGS LLNLLIEELR HTALIHEDML HKLEVLEELD YRLGSPVSAS  60
FSAAYCAVAV ECTLKYLGTC SSRDVISNKS AYVNAINGIW RGHIPCMESS SSSGVGCRLY  120
TAELKRWRDD IEASLSDPKV LKRLESYNGR EDAIWKLKLY LLEASANLAP YFDEIALFAD  180
LYGNNCQTHE LDGDKQEPSA LAFLQRVNNR NVEELPIEKQ TTEAPKENWD TEATFGIQRT  240
EPPNEENEIT EEARNENQTK EAPSEIQTTE SRVENMITEE APSEIQTEEA LIENQITKEA  300
SNENQTKEAL IENQISEALI ENMITEEAPS EIQTEEALIE NQTSEALIED MITEEAPSEI  360
QTEEAPIENQ TTEALIENQI TKEASDENQT KEALIENQTT ELIENQVTEE VPNENRTEES  420
PIENQIIEEA LDENQTKESP SENQTTEALI VNQITEEAPN ENQTKEAPIH KIAGAPTGNV  480
GADTDLCDQH GFATASAEEC NESEQGLDGA SDHATKFHLP SPKKWKISPL RKYEPQDIII  540
RRKKKRWSEF EEITLRSAVN QYGEGNWKLI LSTHIDVFEE RTDVDLKDKW RNLKHHRAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1540545RRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L6TM2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183419.10.0telomeric repeat-binding factor 2
RefseqXP_025632855.10.0telomeric repeat-binding factor 2
TrEMBLA0A445AGP20.0A0A445AGP2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3015222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.29e-12MYB_related family protein