PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.L417Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 27099.4 Da PI: 9.2753 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.1 | 1.8e-12 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky Araip.L417Q 97 PWSQEEHRLFLIGLEKLGKGDWRGISRNFVVSRTPTQVASHAQKY 141 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.515 | 6 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.506 | 89 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-16 | 93 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-17 | 93 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-8 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 95 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-8 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 6.6E-10 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTIMNRRCSG CSKNGHNSRT CPYYSSASRT TVTTVKLFGV PLSMTHGSGS CSAASPNHNS 60 PFSHYSSDGY VLDNDPSTPA ATINCHHPPP SINKGIPWSQ EEHRLFLIGL EKLGKGDWRG 120 ISRNFVVSRT PTQVASHAQK YFIRLRQSNA TPRKRRSSLF DMFPNMASNS ASLKEEQVLL 180 QPSKNSQLSN VEEELNETIM GSNEATPASP LPGFFRPPYP ALPFSSWPSS ACSFGEATLI 240 LDGRPLH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.L417Q |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016174549.1 | 0.0 | transcription factor MYBS3-like | ||||
Swissprot | Q7XC57 | 4e-48 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A444XCQ1 | 0.0 | A0A444XCQ1_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150607.1 | 1e-61 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29920 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 8e-46 | MYB_related family protein |
Publications ? help Back to Top | |||
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