PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.L0YAL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 236aa MW: 25832.3 Da PI: 6.5123 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.8e-34 | 125 | 179 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGGs++AtPk +l++m+v+gLt++hvkSHLQkYRl Araip.L0YAL 125 KQRLRWTNDLHERFVDAVAQLGGSDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 179 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.005 | 122 | 182 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-32 | 124 | 180 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.99E-18 | 124 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-26 | 125 | 180 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-9 | 127 | 178 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.3E-10 | 211 | 233 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MPREEGSKGT EEEGVTVYAR KKRSESEIEG TPGWPTVPPN STTVLTMSIE LQSLSCLVGS 60 GDANASTGPT IITPNSVFFS LFYINDKCIT QTTLLPRNSL VCDHPMDCVA TAMDLVNGGN 120 SLASKQRLRW TNDLHERFVD AVAQLGGSDR ATPKGVLRVM GVQGLTIYHV KSHLQKYRLA 180 KYLPGSSTDG KNAEKKETED VLSNLDGSSG MQITEALKLQ MEVQKRLHEQ LEVIHI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-25 | 125 | 182 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-25 | 125 | 182 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-25 | 125 | 182 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-25 | 125 | 182 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-25 | 125 | 182 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.L0YAL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095294 | 2e-92 | BT095294.1 Soybean clone JCVI-FLGm-7I11 unknown mRNA. | |||
GenBank | BT095812 | 2e-92 | BT095812.1 Soybean clone JCVI-FLGm-25I12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015940282.1 | 8e-94 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_015940285.1 | 8e-94 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_015940289.1 | 8e-94 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_015940293.1 | 8e-94 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_025613840.1 | 8e-94 | myb family transcription factor PHL7 | ||||
Refseq | XP_025613848.1 | 8e-94 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 2e-65 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A445AYF3 | 4e-86 | A0A445AYF3_ARAHY; Uncharacterized protein | ||||
STRING | cassava4.1_011390m | 1e-75 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 6e-68 | G2-like family protein |