PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KM0ZG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 143aa MW: 16571.5 Da PI: 8.4045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 118.8 | 5e-37 | 8 | 122 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y+++Pw+L+ e ++wy++s+r +nr+t++gyW+ g +++v+s+ ++ Araip.KM0ZG 8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYSFDPWELD-----EGNQWYYYSRRT--------QNRVTANGYWNPMGIEEAVVSNsSN 91 79*************************999.99**************8.....779******984........58*****************998677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk vfy g+ap+g++t+W+m+eyrl Araip.KM0ZG 92 RRVGIKKFYVFYVGEAPHGNRTNWIMQEYRL 122 78***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-44 | 6 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.498 | 8 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 9 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MGDSNVNLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLDLYSFDP WELDEGNQWY 60 YYSRRTQNRV TANGYWNPMG IEEAVVSNSS NRRVGIKKFY VFYVGEAPHG NRTNWIMQEY 120 RLSDSAASSS RSSTKRKSQP KTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-36 | 4 | 122 | 13 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-36 | 4 | 122 | 13 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-36 | 4 | 122 | 13 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-36 | 4 | 122 | 13 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swm_B | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swm_C | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swm_D | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swp_A | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swp_B | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swp_C | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
3swp_D | 5e-36 | 4 | 122 | 16 | 145 | NAC domain-containing protein 19 |
4dul_A | 4e-36 | 4 | 122 | 13 | 142 | NAC domain-containing protein 19 |
4dul_B | 4e-36 | 4 | 122 | 13 | 142 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KM0ZG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029153137.1 | 4e-94 | NAC domain-containing protein 104 isoform X1 | ||||
Swissprot | Q8GWK6 | 4e-57 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A444ZTA0 | 1e-85 | A0A444ZTA0_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444ZTP3 | 2e-85 | A0A444ZTP3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G08010.1 | 1e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 5e-58 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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