PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KK5LI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23920.1 Da PI: 9.5915 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.1 | 1.1e-13 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k i n+s+r+ t kR+ g+ KK E+S+LC+++++ ii+ ++ Araip.KK5LI 9 KYIANDSKRKATQKKRKSGLTKKVDEISTLCGVDACAIIYTPD 51 5699************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.035 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.04E-28 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-22 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-14 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MARKKVEFKY IANDSKRKAT QKKRKSGLTK KVDEISTLCG VDACAIIYTP DEPRPEVWPS 60 PLEVNRVISR FKEMPELDQS KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS 120 LGGYQSLDNA TMIDLNDLAW IIDQNIKEVN KQISKLQGQE GTSSNNNRVA TINEEQAQVD 180 NIINDGVFSF VDAANNFQND YRPTPFNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVEFKYIANDSKRKATQKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KK5LI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016203612.1 | 1e-153 | agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_025630965.1 | 1e-153 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-48 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A445EVJ5 | 1e-128 | A0A445EVJ5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004500454.1 | 5e-69 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-43 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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