PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KCT42
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 548aa    MW: 60570.5 Da    PI: 7.0573
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KCT42genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092117135321
                  ETTTTEEESSHHHHHHHHH CS
      zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                  C+dCgk F ++  L  H++
  Araip.KCT42 117 CKDCGKGFQSWRALFGHMK 135
                  ******************7 PP
2zf-C2H212.50.00045452474123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+Fs+   L  H r+H
  Araip.KCT42 452 HECPICFKVFSSGQALGGHKRSH 474
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-52046No hitNo description
SMARTSM003550.262345IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.122345IPR007087Zinc finger, C2H2
PfamPF139123.5E-52345IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-5114142No hitNo description
PROSITE profilePS5015711.531115142IPR007087Zinc finger, C2H2
SMARTSM003550.0086115137IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-5117139IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SMARTSM003550.14357379IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-11357381IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-7357379No hitNo description
PROSITE profilePS501579.868357384IPR007087Zinc finger, C2H2
PROSITE patternPS000280359379IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-7447474No hitNo description
SMARTSM003550.09452474IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785452479IPR007087Zinc finger, C2H2
PfamPF139121.2E-11452476IPR007087Zinc finger, C2H2
PROSITE patternPS000280454474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MMNPTMEEED YNEGQHINKK NKHVCKFCSR SFPCGRSLGG HMRSHVINGD IDHHHHDNNK  60
LLASSSSTAK IKKMLSSSSS TENNTGIGSE GYGLRENPKK TWRLTNSTSE DNSLLFCKDC  120
GKGFQSWRAL FGHMKCHSSE KVESMECDQD SSWTNNSASH SDNEEANAPS RRRRSKRTRT  180
RYIAPLSAPA ATTTDSSVSE ADEHEQEEVA MSLMMLSRDL SPWCGVNSVS EFSKNKNKKL  240
VNIGSEFSKL GSYLSSPNLS SKGKKSSEFL ATESAKGVKV MNNTTVSVNG FSKIIGKDKK  300
KYELDSESAF EEGTTNNKYS SIKAKFWDSG SNKKPNSSEG EFSIKSSSSH NHKRGKFECT  360
TCNKIFHSYQ ALGGHRASHK KIKGCSFASR NNNDQSSENS IEFEAEAEAE HEEAPPPSSP  420
TPTDASQQVH EFGNNSNGFD RESKKGNKNK GHECPICFKV FSSGQALGGH KRSHMASASD  480
TGNFHQTVVL QESSVPEIRD LLDLNLPVAE AAATEEDDEE EINPHASDSY TTWWENHKQE  540
ALVGLMSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KCT42
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182454.10.0zinc finger protein ZAT4-like
RefseqXP_025684265.10.0zinc finger protein ZAT4
TrEMBLA0A444WWN30.0A0A444WWN3_ARAHY; Uncharacterized protein
STRINGXP_007157656.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-25C2H2-like zinc finger protein