PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.K558L | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28919.3 Da PI: 8.2214 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.7e-29 | 39 | 89 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nr+vtfskRrng+lKKA+ELSvLCda+v viifs++g+l+e+ss Araip.K558L 39 KRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSS 89 79***********************************************96 PP | |||||||
2 | K-box | 48.1 | 5e-17 | 137 | 211 | 17 | 91 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 l++ ++ L + L + R++lG +L+s s+ e+qq+e++L++sl+ iR +K++l++eqie+lq k e +++ Araip.K558L 137 LSRRVSFLSPKFGLLLECVRKMLGHCLSSSSFDEIQQMEDKLHTSLQCIRVRKTQLFKEQIEQLQSKCMEKPSKH 211 555566666677778899************************************************988766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.011 | 31 | 91 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-38 | 31 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.34E-38 | 33 | 106 | No hit | No description |
SuperFamily | SSF55455 | 8.5E-31 | 33 | 111 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 33 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 33 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-25 | 40 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 53 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 68 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.054 | 118 | 229 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-14 | 136 | 205 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MCLWLKINRN KFPTTVEESP QSKLERIWIE MVRGKTEMKR IENECNRKVT FSKRRNGLLK 60 KAHELSVLCD AQVGVIIFSQ KGTLFEFSST SSHISKILER YQEYTGEFPH NKLREDYIQK 120 LKFDSASMEE KIEILELSRR VSFLSPKFGL LLECVRKMLG HCLSSSSFDE IQQMEDKLHT 180 SLQCIRVRKT QLFKEQIEQL QSKCMEKPSK HREEEATETT HHTLEVETDL FIGLPKQCAD 240 HNQIYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-18 | 31 | 122 | 1 | 89 | MEF2 CHIMERA |
6byy_B | 8e-18 | 31 | 122 | 1 | 89 | MEF2 CHIMERA |
6byy_C | 8e-18 | 31 | 122 | 1 | 89 | MEF2 CHIMERA |
6byy_D | 8e-18 | 31 | 122 | 1 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.K558L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020966914.1 | 1e-162 | MADS-box protein AGL42-like isoform X1 | ||||
TrEMBL | A0A444XW10 | 1e-136 | A0A444XW10_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G29300.1 | 5e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-50 | AGAMOUS-like 20 |