PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JS7DG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27124 Da    PI: 8.1961
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JS7DGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.4e-261058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsst klyey+
  Araip.JS7DG 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTSKLYEYA 58
                 8***********************************************8 PP
2K-box76.66.4e-2681170998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + e++ + +q+e++ L+++++nLq+++R+l+G+ L  Ls+++Lq Le+qLe sl+ +R kK+++l+e+i+el +k + +++en +L kk+
  Araip.JS7DG  81 NPESEVKFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKV 170
                  67899*********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.543161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.82E-41278No hitNo description
SuperFamilySSF554551.7E-32292IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2383170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.40586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TSKLYEYANT  60
SMKSVIERYN SCKEEEQQLI NPESEVKFWQ REAEILRQQL QNLQENHRQL MGQHLYGLSV  120
RNLQDLENQL EMSLQGVRMK KEQILTEEIK ELNRKGNLIH QENLELFKKV NLMQEENTQL  180
CRKVYGTSEM EATSRNGFIP IPYGIQVGGG GSQELVQLQL CQPEQEACET SASATK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21183183MEF2C
5f28_B3e-21183183MEF2C
5f28_C3e-21183183MEF2C
5f28_D3e-21183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JS7DG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200575.11e-172MADS-box transcription factor 23 isoform X2
SwissprotQ9SZJ62e-98AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A444WW381e-166A0A444WW38_ARAHY; Uncharacterized protein
STRINGAES959161e-134(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-101AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]