PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.I60BC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26256 Da PI: 6.5178 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.2 | 1.1e-21 | 5 | 90 | 2 | 81 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 p GfrF Pt+eelv +yL+ +++ + +++++vi+ vdi+ vePw+Lp+ +++e+++w+fF++r++++a+g r nr+t+sg Araip.I60BC 5 PTGFRFYPTEEELVAFYLNTQLQLQGhaNNINRVIPVVDINGVEPWTLPSlageLCREEKEQWFFFVPRQEREARGGRINRTTASG 90 78******************98777644778889***************546654455777*********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-30 | 4 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.831 | 4 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-11 | 5 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEDPPTGFRF YPTEEELVAF YLNTQLQLQG HANNINRVIP VVDINGVEPW TLPSLAGELC 60 REEKEQWFFF VPRQEREARG GRINRTTASG KAPTGRKTKW KMHEYRAIVQ APNQSPTAIP 120 QLRHEFSLCR VYVISGSFRA FDRRPREVVV PRVLHHGSST TSAQQHQGES SARVQANNNN 180 NGSSSSETSL SSGGPDLPPD TGGGGSSSNW NSSEVQVQAQ VQEPLWEWEQ LDWL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.I60BC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935858.1 | 1e-149 | NAC domain-containing protein 90 | ||||
Refseq | XP_025614236.1 | 1e-149 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 6e-59 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A445BWI5 | 1e-148 | A0A445BWI5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G31150.1 | 2e-81 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-53 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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