PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HCR6S
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 354aa    MW: 39790.1 Da    PI: 6.9365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HCR6SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07205226223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C+ Cgk F+r  nL+ H+r H
  Araip.HCR6S 205 FCQVCGKGFKREANLRMHMRAH 226
                  6*******************99 PP
2zf-C2H210.90.0014291314123
                  EEETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                  y+C+ C+ k Fs  s+L++H + +
  Araip.HCR6S 291 YVCKRCNnKNFSLLSDLRTHEKHC 314
                  9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.24E-6203228No hitNo description
SMARTSM003555.8E-4204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321204231IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-7206257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SMARTSM0035539253286IPR015880Zinc finger, C2H2-like
SMARTSM0035534291313IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAAASSDEGG GGGGFPPMTQ YSSSSSSTMY HYLSVLNDKI NELQSLVGVV ASPNRHHSSI  60
PCSSYSMAIS TMTSTIQDII LASSSFRLTF QQHINSYNNP SSGNIIATST CNNQQLELHP  120
HHHQSYDYNN SNIITSSVAN DEPAQEQDEE EEEETLHWFS EPYNNNNSTV IYCDDNNNTK  180
DDDGEEETDI IELDAADLLA SYTHFCQVCG KGFKREANLR MHMRAHGDEF KTSEALKNNN  240
NNKKMMMKKK KKYSCPEDGC RWNKNHAKFQ ALKSMVCVKN HYKRSHCPKM YVCKRCNNKN  300
FSLLSDLRTH EKHCGDPNKW LCSCGTTFSR KDKLFGHLAL FLGHSPVHAA TQGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.HCR6S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191552.10.0zinc finger protein STOP1 homolog
RefseqXP_025641003.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A445E4U10.0A0A445E4U1_ARAHY; Uncharacterized protein
STRINGXP_007150139.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-77C2H2 family protein