PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H0H56
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 331aa    MW: 37607.9 Da    PI: 7.0107
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H0H56genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-3971130261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s
  Araip.H0H56  71 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRS 130
                  7899******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.2E-3473129IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-2574123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.64675129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDPSSGQQNQ QVSDETYMYH FMCSNHHMFL LFLYLLIQMG NNNNNQSLES MMLGCTKQEQ  60
QQQEKKPRPQ PEQALKCPRC DSTNTKFCYY NNYSLSQPRY FCKSCRRYWT KGGTLRNVPV  120
GGGCRKNKRS CSSSSKRAQD QLPFNPDHNP LMNSLPPLSY DSEFTLALAR LQKQTGGVHL  180
GLDDHHDLSM LVNHTNTNTN TTTQQQQQGF LDALRSNGFN SNTMHSDLYY GGNGDMGEVY  240
NEIMLPYEQE MSVETTQAVT VTTTKQELCN VSYNCNSNNN NNNKVLWGFP WQINGDTNML  300
GDIDLSRASW NGNGPLTTPL SWHGLLNTPL M
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H0H56
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952352.11e-172dof zinc finger protein DOF2.1
TrEMBLA0A445E4G71e-170A0A445E4G7_ARAHY; Uncharacterized protein
STRINGXP_004505949.11e-103(Cicer arietinum)
STRINGGLYMA12G07710.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-39Dof family protein