PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.GU31N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 122aa    MW: 14099.7 Da    PI: 9.8641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.GU31NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14241546
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     ++ E++l  +++ ++G++ W++Iar+++ gRt++++k++w++
      Araip.GU31N  2 SPHEQQLVMHLHSKWGNR-WSRIARKLP-GRTDNEIKNFWRT 41
                     899***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.11E-9141No hitNo description
PROSITE profilePS5129422.369147IPR017930Myb domain
SMARTSM007174.0E-8145IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-11248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-18244IPR009057Homeodomain-like
PfamPF002491.5E-12241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSPHEQQLVM HLHSKWGNRW SRIARKLPGR TDNEIKNFWR TQMRKQKAQE KKRAPATTQS  60
SPSSSSTSYQ SSSSSNKDIG EESFYDTGGH NEPLPLWMIM DNQEQEQSKV LFPSSYEPLL  120
TT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.GU31N
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029151015.15e-61transcription factor MYB48
SwissprotQ9LX828e-27MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A445A9Y13e-58A0A445A9Y1_ARAHY; Uncharacterized protein
TrEMBLA0A445E4983e-58A0A445E498_ARAHY; Uncharacterized protein
STRINGXP_008457537.14e-31(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2924222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.23e-27myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]