PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G5GE8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 392aa    MW: 45038 Da    PI: 8.7048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G5GE8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06112136123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+  dC  s++rk++L+rH+  H
  Araip.G5GE8 112 YVCTvdDCQASYRRKDHLTRHLLQH 136
                  99*******************9887 PP
2zf-C2H210.90.0014141166123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kCp  +C+  Fs k n+ rH +  H
  Araip.G5GE8 141 FKCPmeNCNLIFSIKGNMARHVKEiH 166
                  89********************9988 PP
3zf-C2H219.82.1e-06180204123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp   Cgk+F+  s L++H  +H
  Araip.G5GE8 180 FVCPeiGCGKVFKFASKLRKHEDSH 204
                  89*******************9888 PP
4zf-C2H214.69.4e-05284309123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kC+   C+  Fs+ksnL++H +  H
  Araip.G5GE8 284 FKCEfkGCSCKFSSKSNLVTHKKAvH 309
                  89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-7106138No hitNo description
Gene3DG3DSA:3.30.160.603.0E-11107138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024112136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097112141IPR007087Zinc finger, C2H2
PROSITE patternPS000280114136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4139167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.32E-6139167No hitNo description
SMARTSM003550.0086141166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162141171IPR007087Zinc finger, C2H2
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-7178206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0054180204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471180204IPR007087Zinc finger, C2H2
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SMARTSM003554.3226251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228251IPR007087Zinc finger, C2H2
SMARTSM00355120254275IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.7E-8265321No hitNo description
SMARTSM003550.003284309IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-5284311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.256284314IPR007087Zinc finger, C2H2
PROSITE patternPS000280286309IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-5312338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.1315341IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280317341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MPEIQMDEPM ESGERPVFKD IRRYFCEYCG ICRTSWKKLE LKEIMKHIAK SPTTLANNVV  60
LASKNLPTCC STCKAIHLSI IGLDGLVSGR ETSCEAPSRM PQSRFIQDER PYVCTVDDCQ  120
ASYRRKDHLT RHLLQHEGKT FKCPMENCNL IFSIKGNMAR HVKEIHDEGS TSTNVESKQF  180
VCPEIGCGKV FKFASKLRKH EDSHGKFSSN LIFFVNNQIK LQSVDVVCLE PGCMKHFTNN  240
QCLKEHIESC HQYVTCDTCG SRQLKKNIKR HLCTHEADKS LAEFKCEFKG CSCKFSSKSN  300
LVTHKKAVHF KEKPFVCGFP DCGLRFAYKH VRDKHEKTGK HVFTHGDFEE ADEQFRSRPR  360
GGRKRVCPTV EMLVRKRVTP PSQLENLLFM QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A6e-12983388183Aart
2i13_B6e-12983388183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G5GE8
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184023.10.0transcription factor IIIA isoform X1
RefseqXP_016184024.10.0transcription factor IIIA isoform X1
RefseqXP_025633852.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-107TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A445EWZ00.0A0A445EWZ0_ARAHY; Uncharacterized protein
STRINGXP_007142319.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-100transcription factor IIIA