PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.G4JCG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 33155.9 Da PI: 8.8794 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++sF++ L H +H Araip.G4JCG 106 YDCKTCNRSFPSFQALGGHRASH 128 88**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 192 | 214 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Araip.G4JCG 192 HECSICGAEFTSGQALGGHMRRH 214 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.31E-8 | 105 | 128 | No hit | No description |
SMART | SM00355 | 0.23 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.4E-12 | 106 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.31E-8 | 187 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 190 | 216 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.6E-13 | 191 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 192 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 192 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 194 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEQQVEEEHV VRSNKNNNND HMQIMMKGKR TKRQRLPSPL RLAMAMPSST SSTSSFGLDT 60 PTTTARTEDE DNNDEDMANC LILLAQGGGG RGTRHNNKKE SIFNLYDCKT CNRSFPSFQA 120 LGGHRASHKK PKILTNSSSV ITTQENYNND PTSTALTLQI SNSSLYCRSI TTTKTTTVME 180 TTAPISKASK VHECSICGAE FTSGQALGGH MRRHRGLLTV SSATAATTTT TTTTTSSSIS 240 GANADHQETK NNNNNVNKNI LKLDLNLPAP EDDHHNRVPK FSFQSKEKVI VFSSAASLVD 300 CHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.G4JCG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207645.1 | 0.0 | zinc finger protein ZAT5-like | ||||
Refseq | XP_025657648.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A444YNY1 | 0.0 | A0A444YNY1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G37010.2 | 1e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 1e-42 | C2H2 family protein |