PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FZ3N9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 333aa    MW: 38228.7 Da    PI: 6.9556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FZ3N9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.6e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W+  a+  g++Rt+k+c++rw++yl
      Araip.FZ3N9 22 RGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding52.41.2e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Araip.FZ3N9  75 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5241769IPR017930Myb domain
SuperFamilySSF466893.56E-3119116IPR009057Homeodomain-like
SMARTSM007172.4E-152171IPR001005SANT/Myb domain
PfamPF002491.8E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-232376IPR009057Homeodomain-like
CDDcd001674.14E-122469No hitNo description
PROSITE patternPS0017503746IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75170124IPR017930Myb domain
SMARTSM007172.7E-1574122IPR001005SANT/Myb domain
PfamPF002491.2E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2377123IPR009057Homeodomain-like
CDDcd001679.79E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSTIIAKREI GSSNEEETDL RRGPWTLEED SLLIHYIARH GEGRWNMLAK SAGLKRTGKS  60
CRLRWLNYLK PDIKRGNLTP QEQLLILELH SKWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
QKQARQLNIE SGSKRFIDAV KCFWMPRLLQ KMEQSSASNS PKIMNNFNNH AEASSMSTSP  180
ISNFSNNIPN SLSPPQRELF MDVPSNHHFS NMSSPNNNNV PPSSDSLQFS QLFEMSQHLT  240
SASPPNVFEN YNVYYNNNPM IQENWNNVVD ANGNNNNNIN NYGAMVEGLS MDPLSPMGTY  300
YDIPQFDFQT CGSDWILDNN NNMGDTLWNM DSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26191234107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FZ3N9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174356.10.0transcription factor MYB62
RefseqXP_025674337.10.0transcription factor MYB62
TrEMBLA0A444XW250.0A0A444XW25_ARAHY; Uncharacterized protein
STRINGXP_007142925.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-85myb domain protein 62