PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FQ8DT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 486aa    MW: 56006.2 Da    PI: 8.5563
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FQ8DTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP44.44.3e-1436724177
                 EE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                 r  q   +fh ls+fDe+krsCrr+L++hn+rr++k 
  Araip.FQ8DT 36 RNGQFFDKFHVLSDFDEGKRSCRRKLERHNNRRQRKP 72
                 5667788**************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.785171IPR004333Transcription factor, SBP-box
PfamPF031108.3E-83670IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.2E-43858IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.69E-103974IPR004333Transcription factor, SBP-box
SuperFamilySSF556531.44E-14412485IPR020069Ribosomal protein L9, C-terminal
PfamPF039482.2E-16415483IPR020069Ribosomal protein L9, C-terminal
Gene3DG3DSA:3.10.430.1002.8E-22416486IPR020069Ribosomal protein L9, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLPLLCSTAR PRDTKFEGRF WNTLLEEAIR VMISIRNGQF FDKFHVLSDF DEGKRSCRRK  60
LERHNNRRQR KPADSRAEAS HEPLPVAQNE DSNNDGETGK GLDSSNLSCE INEKEASLDL  120
EDEPVANLNS APDMQNITND SVMTFLTSGE TQVNSGKDAS NLSNSPSYCD NKSAYSSLCQ  180
TGRISFKLYD WNPAEFPRRL RHQIFQWLAS MPVELEGYIR PRCTILTIFL AMPKNMWIYE  240
DPMYYVRDLV APGKFLSARG NALIYLNDMF FRVMKDGTSM TKFKVNMQAP RLHYVHPTYF  300
EAGKPLEFVA CGSNLMQPKF RHYAFVYLAM LGYAPMTEER RGILWFGRER LKYPLCSPNV  360
KPRLLVSFSG KYLKCEYCVP SPHNWTGNNM SCAFENQLYK IYVPHTEETL FGPAFIKVKR  420
KYGKGKLIFG SVTAQDLVDI IKAQLQREVD KRIVELLEIH ETGEYIAELK LYPEVTVRIR  480
LNVFAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v61_BJ1e-23427486138197Ribosomal Protein L9
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FQ8DT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122280.0KF312228.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973007.10.0LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 7, partial
TrEMBLA0A444ZZV20.0A0A444ZZV2_ARAHY; Uncharacterized protein
STRINGGLYMA13G28460.31e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-111squamosa promoter binding protein-like 7