PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.F5AGL

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 330aa MW: 37207.1 Da PI: 8.2025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.F5AGL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.9	1.6e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv ++++ + ++i evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++ Araip.F5AGL 17 LPPGFRFHPTDEELITHYLYKKVIDTNFAA-RAIGEVDLNRCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFR-GKS 112 79***********************999.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wvmhe+rle Araip.F5AGL 113 LVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 143 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-65	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.675	17	167	IPR003441	NAC domain
Pfam	PF02365	2.9E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEKVASLVLK EEEQMDLPPG FRFHPTDEEL ITHYLYKKVI DTNFAARAIG EVDLNRCEPW 60 DLPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATESGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEF RLEGKFSIHN LPKTAKNEWV ICRVFRKSSA GKKVHISGIM 180 RLDTFRTELD SSGLPPLTET SPSFDTIHDE SPYVPCFSNP IDVPRNQAAG GSGGGGGVFG 240 GSFPNNSSSS VSAYAVSSNI LPRMPICGGS LYSTQHQDQS ILRALYESNE REMISVSQET 300 GLTTEMNVET NSVVSNFDIG RAHFESLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-56	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-56	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-56	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-56	14	173	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-56	14	173	14	171	NAC domain-containing protein 19
4dul_B	6e-56	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.F5AGL

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016192125.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-138	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A445G4X0	1e-164	A0A445G4X0_GLYSO; NAC domain-containing protein 100
TrEMBL	V7CEG8	1e-164	V7CEG8_PHAVU; Uncharacterized protein
STRING	XP_007155297.1	1e-165	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-137	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]