PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EKK4C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 287aa    MW: 31788.9 Da    PI: 8.0045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EKK4CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-182570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT++Ed  l+++v+q+G ++W+ I++ ++ gR++k+c++rw + 
      Araip.EKK4C 25 KGSWTPQEDATLLKLVAQHGARNWSVISNGIP-GRSGKSCRLRWCNQ 70
                     799*****************************.***********985 PP
2Myb_DNA-binding55.81.1e-1779121347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ede++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
      Araip.EKK4C  79 PFTPAEDEIILKAHAVHGNK-WATISRLLP-GRTDNAIKNHWNST 121
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1012071IPR017930Myb domain
SuperFamilySSF466891.87E-3022118IPR009057Homeodomain-like
SMARTSM007178.4E-162473IPR001005SANT/Myb domain
PfamPF002494.1E-182570IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-252678IPR009057Homeodomain-like
CDDcd001676.00E-142769No hitNo description
PROSITE profilePS5129426.31372126IPR017930Myb domain
SMARTSM007175.8E-1576124IPR001005SANT/Myb domain
CDDcd001672.02E-1179122No hitNo description
PfamPF002491.2E-1479121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2379125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MALFESVAMM IEDNNKFDEE ADRIKGSWTP QEDATLLKLV AQHGARNWSV ISNGIPGRSG  60
KSCRLRWCNQ LSPDVQHRPF TPAEDEIILK AHAVHGNKWA TISRLLPGRT DNAIKNHWNS  120
TLRRRKGVTV AFPGAGFPSA AATDASASGG LSGFSSAATS SSSDFSPTFV CQKRKGEQLE  180
LPQNVNKKPC LAAVAVNSHA EEEVRQKRNA EEEEEGGVTT LSLLPPGEKP LGAEGVWRKE  240
EEVNRYGEHA WLMKMMRPMI AEEVRRYIQS LQKTQPLFEP DPPSKNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-37241253104MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-37241253104C-Myb DNA-Binding Domain
1msf_C8e-37241253104C-Myb DNA-Binding Domain
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EKK4C
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166761.10.0transcription factor MYB44-like
RefseqXP_020962922.10.0transcription factor MYB44-like
RefseqXP_025666268.10.0transcription factor MYB73-like
RefseqXP_025666269.10.0transcription factor MYB73-like
SwissprotO231601e-51MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A444YDI30.0A0A444YDI3_ARAHY; Uncharacterized protein
STRINGXP_004491024.14e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-53myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]