PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.EFI4Q

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 336aa MW: 38417.8 Da PI: 9.2785

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.EFI4Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55	2.7e-17	7	79	20	91
FAR1 20 kkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +++ng ++++t+ C+++ +r+++ + +++r+++++tr+gC ++++k + +g+w v+++++eHnHel p Araip.EFI4Q 7 L-KNKNGDFVRYTYLCNRQRFRDKKWLEkVDQKREHKVVTRCGCPVEIRIKSKGdSGRWFVSRFVEEHNHELLP 79 3.357899************999766468899999**********9999**************975 PP
2	FAR1	26.6	2e-08	114	150	56	91
FAR1 56 aetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + ++gC ++++k + + +w v+++++eHnHel p Araip.EFI4Q 114 KMAHCGCPVEMRIKPKGdSRRWFVSHFVEEHNHELLP 150 5678********999899************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-15	8	79	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.7E-5	114	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MRHGKKLKNK NGDFVRYTYL CNRQRFRDKK WLEKVDQKRE HKVVTRCGCP VEIRIKSKGD 60 SGRWFVSRFV EEHNHELLPM KSMSLLMHRR VVLILFHLLS EICTTKLGGK WRCKMAHCGC 120 PVEMRIKPKG DSRRWFVSHF VEEHNHELLP MKYVDYLPAH CKISNVDIAH MESMRQVGIS 180 IPKIYESIDA PAGGFNFVPF TKRDMYNEVF CIGVEWVHSY STVVRLLRPE LATLGDELRI 240 LLVLGQKTQD VVMNLLGLGV SSGISAAHAG VLVIEGPAVP MLHQHQHRQP QDEGAKILSP 300 TVNMVSTITM LHFGHVSLEW MASESKNNGE VCSGDP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.EFI4Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025665221.1	2e-61	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YED9	3e-47	A0A444YED9_ARAHY; Uncharacterized protein
TrEMBL	A0A445BG57	2e-47	A0A445BG57_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9185	2	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	9e-10	FAR1-related sequence 11