PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E5CWX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 379aa    MW: 42720.2 Da    PI: 7.1692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E5CWXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161563148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd++++ G g +W++ ++  g++R++k+c++rw +yl
      Araip.E5CWX 15 KGPWTAEEDRILVDYINKNGHGsNWRALPKIAGLNRCGKSCRLRWSNYL 63
                     79*********************************************97 PP
2Myb_DNA-binding57.72.7e-1869113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++l+++++++lG++ W++Ia++++ gRt++++k++w++ 
      Araip.E5CWX  69 RGKFSQEEEKLIINLHQLLGNK-WSAIASHLP-GRTDNEIKNFWNTN 113
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8511063IPR017930Myb domain
SuperFamilySSF466891.17E-2912110IPR009057Homeodomain-like
SMARTSM007171.1E-121465IPR001005SANT/Myb domain
PfamPF002498.9E-151563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-221670IPR009057Homeodomain-like
CDDcd001672.81E-91763No hitNo description
PROSITE profilePS5129425.48364118IPR017930Myb domain
SMARTSM007171.5E-1768116IPR001005SANT/Myb domain
PfamPF002493.1E-1769114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2671118IPR009057Homeodomain-like
CDDcd001677.98E-1371114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGRSRSGYDE SGLKKGPWTA EEDRILVDYI NKNGHGSNWR ALPKIAGLNR CGKSCRLRWS  60
NYLRPGIKRG KFSQEEEKLI INLHQLLGNK WSAIASHLPG RTDNEIKNFW NTNLRKKLLR  120
MGLDPVTHRP RLDHNHNNQL QLLSNLQHLL LAANILNNNN NNNNALLSTL LINSDHAKLQ  180
ILQNMLQILA TTTTTNNNNL ALNLEPLLNH QQFGPLTSSS SSSSVPNGFY ESLGLNESML  240
QNLICSNDSF PCQNQPNFQN FEAPPHDDNQ HNMNGGSCMM KSENVNNNNN EKVVVDGTNS  300
SSTPTTPLNC YSLPNLVSAS SPDHEYSNKV NNNNNNNNNN NNNNSPTSTN NFEMWTDFMY  360
EEASDAYWKH IIDQESNQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E5CWX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193220.10.0transcription factor MYB39-like isoform X1
TrEMBLA0A445A7F60.0A0A445A7F6_ARAHY; Uncharacterized protein
STRINGGLYMA12G01960.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.12e-68myb domain protein 107