PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E28AI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 580aa    MW: 65856.1 Da    PI: 5.0111
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E28AIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.87.2e-752005782374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalkl.......fs 85 
                   + Ll++Ae v  +++e+a++lL + + ++   +++ qR++++f+eAL++r+++++ ++++ + +s  +++n       ++e +    +        +
  Araip.E28AI 200 AQFLLAAAERVGCRQFERASRLLLHCQWNSDVIANAAQRVIFHFAEALRERINKETGRVMEVVMSSYHDSQNqnqnkneETEMILK--MsvneslkCH 295
                  5789**************************************************88888777644443333324444433333333..2336677788 PP

         GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                  +  P+ ++ ++   qa++e ++ e+++H iD++i  G+Q  aL+qaL          ++T++g  +  +k+++e tg+rL++fAe+l++pf+++++++
  Araip.E28AI 296 QNLPFNQVMQFPGVQAMVENLAFETKIHLIDLQIRSGVQCTALMQALXXXXXXXXXXKVTAIGTCA--EKNKIEGTGQRLTSFAESLNLPFSYKAIIV 391
                  999*************************************************************55..9***************************** PP

         GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                   +l++++l++++v+ +E +aV +++ l +l++++ +le+    ++ ++++++P v++v e +++hns+sF++rf++al y+sa++d+le+ l ++se 
  Araip.E28AI 392 ADLAEIKLDDFDVDDDEGVAVYSAYFLRTLVSRPNCLEN----LMLVIRNIKPSVMIVLEIDSNHNSPSFVNRFIDALFYFSAFMDCLETCLKEDSEC 485
                  *******************************99998888....999**************************************************** PP

         GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+ vE++  +  i+n+va+eg+er+ r+ +l  Wr+ + +  + +  +se+   qa+l+ +++  ++  +v+++ +sl+  Wk+ p+ s+SaW+
  Araip.E28AI 486 RMAVEAV-CAAGIRNIVAAEGKERTVRNVKLDVWRRFFARYKMVETGFSESSLYQANLVAKEFTfGKFCSVDKNGKSLTVSWKGTPMHSLSAWK 578
                  ******9.6789****************************************************777789999999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.991173557IPR005202Transcription factor GRAS
PfamPF035142.5E-72200578IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MGIEPLSSTP FNFSGFQGGY DSVNIHEEKF VLQEKQGFSA LMELDRGDNL FKHQQHKHDH  60
DDEDIKVGDM ILQDVINFDP DYDSLQPISQ EFQETIGLKN IHQAPSSLTI ASLELLRNYG  120
SKFKKLTGEN ISDNFSSDNI ENSACSENQR LSTEEIMRVA GARYVHYSAH WNDDFCIPMH  180
PYGLDLGNLS EEENRDVELA QFLLAAAERV GCRQFERASR LLLHCQWNSD VIANAAQRVI  240
FHFAEALRER INKETGRVME VVMSSYHDSQ NQNQNKNEET EMILKMSVNE SLKCHQNLPF  300
NQVMQFPGVQ AMVENLAFET KIHLIDLQIR SGVQCTALMQ ALXXXXXXXX XXKVTAIGTC  360
AEKNKIEGTG QRLTSFAESL NLPFSYKAII VADLAEIKLD DFDVDDDEGV AVYSAYFLRT  420
LVSRPNCLEN LMLVIRNIKP SVMIVLEIDS NHNSPSFVNR FIDALFYFSA FMDCLETCLK  480
EDSECRMAVE AVCAAGIRNI VAAEGKERTV RNVKLDVWRR FFARYKMVET GFSESSLYQA  540
NLVAKEFTFG KFCSVDKNGK SLTVSWKGTP MHSLSAWKFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3520757727378Protein SCARECROW
5b3h_A9e-3520757726377Protein SCARECROW
5b3h_D9e-3520757726377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E28AI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207558.10.0DELLA protein RGL1-like
TrEMBLA0A444YIQ10.0A0A444YIQ1_ARAHY; Uncharacterized protein
STRINGGLYMA19G40440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-42GRAS family protein