PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DV2WW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 481aa MW: 56454.1 Da PI: 7.5361

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DV2WW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.4	9.5e-18	159	239	11	89
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 F v+k++ ++ + +e+t+++fvC +eg+r++ +++ ++++r+++ etr+gC a+++v+ + +g+w ++ ++ eHnH++ Araip.DV2WW 159 RFAVKKNRIRRYVK-NEVTQQQFVCFREGFRDPGSENdsHRRKREPKLETRCGCLAEMRVHAHVeRGRWIISYFQDEHNHDM 239 58999999888855.55*************9998865677777999**********999*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-15	160	239	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MGWAQLSEFW ASPLYMTLTK NEKKLKLCCA MPHIFPECDY NLEYTVKNAC LDEEVMDHFE 60 GSLFLQDEDV RADNDPLAWE DIEGCCVPKN YTKEVQGIDC NLDKFFGDTF YDNWDERLVD 120 GIDELGYINI KEITASKVVT FSGSDCCIFF LPIIFKDERF AVKKNRIRRY VKNEVTQQQF 180 VCFREGFRDP GSENDSHRRK REPKLETRCG CLAEMRVHAH VERGRWIISY FQDEHNHDML 240 DDRLTFMLIG PRKMNDAAID QMNLMLKVGI KTPQIYLSRK MWATAYIRGH FFGGFQKTSR 300 CERLHSMLGK FVHSRHNLRD FIEQFLRCIC QMRSREAQSE LASVVGDLVL QSPLHALERS 360 AANTLMREIF MLFRPMLLRG CTLKVRSCTL TPSCEIYTLS RSENPNKGWN MSHYRDRSTF 420 KWSCFRMESV GILCDHIFYY ILMRKRYQES SYRSMVEECS IKSVGIYGKM TLLLGINENL 480 P

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MGWAQLSEFW ASPLYMTLTK NEKKLKLCCA MPHIFPECDY NLEYTVKNAC LDEEVMDHFE  60
GSLFLQDEDV RADNDPLAWE DIEGCCVPKN YTKEVQGIDC NLDKFFGDTF YDNWDERLVD  120
GIDELGYINI KEITASKVVT FSGSDCCIFF LPIIFKDERF AVKKNRIRRY VKNEVTQQQF  180
VCFREGFRDP GSENDSHRRK REPKLETRCG CLAEMRVHAH VERGRWIISY FQDEHNHDML  240
DDRLTFMLIG PRKMNDAAID QMNLMLKVGI KTPQIYLSRK MWATAYIRGH FFGGFQKTSR  300
CERLHSMLGK FVHSRHNLRD FIEQFLRCIC QMRSREAQSE LASVVGDLVL QSPLHALERS  360
AANTLMREIF MLFRPMLLRG CTLKVRSCTL TPSCEIYTLS RSENPNKGWN MSHYRDRSTF  420
KWSCFRMESV GILCDHIFYY ILMRKRYQES SYRSMVEECS IKSVGIYGKM TLLLGINENL  480
P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DV2WW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445DLY6	0.0	A0A445DLY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	6e-11	FAR1-related sequence 10