PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.DL86S | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39144.9 Da PI: 8.2834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.3e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g++++l e+i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk++++ +g+ Araip.DL86S 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-EIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKTITT-EGR 109 79***************************9.99***************7777799***************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+apkg+kt+W+mheyrl Araip.DL86S 110 KVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-66 | 10 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.341 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MGIQEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLEIIGEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKTITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLL DSTRKNGSTK LDDWVLCRIY KKNSSAQQKV PNGVVSSSEQ 180 YATQYSNGSS SNSSSSHLDE VLESLPEIDD RCFALPRVNS LRALQQQRHH QEDTKVGLLQ 240 QQQQQGLVAG TGSFLDWASG PGILNDLGQA QQGIVNYGND LFVPSVCHVD SNLVPAKIEE 300 EVQSGVKTQS AFFQQGPNPN DFTQAFSNQL DPYGFSRYSV QPVGFGFRQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-110 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-110 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00012 | PBM | Transfer from AT1G52890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.DL86S |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF546358 | 0.0 | HF546358.1 Arachis hypogaea mRNA for NAC2 transcription factor (NAC2 gene), cultivar L12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016170502.1 | 0.0 | NAC domain-containing protein 72 | ||||
Refseq | XP_025670804.1 | 0.0 | NAC domain-containing protein 72 | ||||
Swissprot | Q9SQL0 | 1e-127 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
TrEMBL | A0A444Y4K2 | 0.0 | A0A444Y4K2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G35550.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-122 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|