PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DID43
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 408aa    MW: 46348.3 Da    PI: 8.7968
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DID43genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.61.6e-21226316190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY +++k  GF vrk    k  +++++++r+f C++ g r+e++ +  +++r +++etrt+C+akl + ++k +++w+v k+ leHnHel+
  Araip.DID43 226 EFYMRFGKCHGFGVRKGDYGKD-DDRNVIRRRFFCNRAGLRDEKHYNrLDRKRCHKPETRTNCQAKLSIYLDKeSSNWKVWKVILEHNHELV 316
                  6****************98887.7888****************99886788889*****************9999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-19226316IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVWTAPTGDE CMIEVADVTC CRKGVLSIQE VQLPARDKKT LSACVLPRRP SLSAPPHRPL  60
YSTIPRPPPS PCVESSHSLV ARDVVWLRVG ATCRVFVAVV SPSPSSVRRS DLRRRRNNSG  120
PRLVGVLLGV VYSLSRSAAQ IEDRCTLLLL VLPFLVMEYT GHSKKFCIED ESECFGEVVS  180
SDADEFDVEQ LDPSGQDDLS NYGDVFGLTA AKIENKVFRT EERAYEFYMR FGKCHGFGVR  240
KGDYGKDDDR NVIRRRFFCN RAGLRDEKHY NRLDRKRCHK PETRTNCQAK LSIYLDKESS  300
NWKVWKVILE HNHELVARCM VHLIPKFRRV SGAAKDQLDV LREYQNNEMV AQFNSIYNVP  360
VMTTCLDPIE KCAAMVYTRT IFTNVKKEID AVGGLNFVSK RRVSTTVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DID43
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445CG621e-157A0A445CG62_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2367223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-13FAR1-related sequence 10