PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.D1U93 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 120aa MW: 13934.3 Da PI: 10.8611 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 42 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C Cg+ F +++ L++H + H Araip.D1U93 42 HVCRVCGRKFYTNEKLVNHFKQlH 65 79*****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.302 | 42 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 65 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MVAYANSHTF TGVPHAVRQW RKEKELYNRL ESKGVIKRNE SHVCRVCGRK FYTNEKLVNH 60 FKQLHESEQM KRVNQIASAR GNRRVKLVAK YSMKMEKYKK TARDILTPRV GCPSVGPCIG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.D1U93 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025632121.1 | 4e-72 | uncharacterized protein LOC112726816 | ||||
Refseq | XP_025632123.1 | 4e-72 | uncharacterized protein LOC112726816 | ||||
Refseq | XP_025632125.1 | 4e-72 | uncharacterized protein LOC112726816 | ||||
Refseq | XP_029146398.1 | 4e-72 | uncharacterized protein LOC112726816 | ||||
TrEMBL | A0A445ADT1 | 1e-68 | A0A445ADT1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G36770.3 | 2e-53 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 9e-46 | C2H2 family protein |