PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D1B6K
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 458aa    MW: 52654.2 Da    PI: 8.2795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D1B6KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.8e-30790186
     trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                 rW++qe+laL+++r++m++ +r++ lk+plWeevs+k+ e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++fdql+
  Araip.D1B6K  7 RWPRQETLALLKIRSDMDSVFRDSTLKGPLWEEVSRKLGEIGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYKFFDQLQ 90
                 8********************************************************************975544..6******98 PP
2trihelix101.95.1e-32283368187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r+++++++ ++  k+plWe++s  m++ g++rs+k+Ckekwen+nk++kk+ke++k+r  e+s+tcpyf++lea
  Araip.D1B6K 283 RWPKGEVHALIRLRTSLDSKYMENGPKAPLWEDISGGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHELEA 368
                  8*********************************************************************8.78999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0095466IPR001005SANT/Myb domain
PfamPF138373.4E-19692No hitNo description
PROSITE profilePS500906.911664IPR017877Myb-like domain
CDDcd122036.44E-24671No hitNo description
SMARTSM007171.2280342IPR001005SANT/Myb domain
CDDcd122034.46E-26282347No hitNo description
PfamPF138376.8E-22282369No hitNo description
PROSITE profilePS500906.946282340IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSFGGNRWPR QETLALLKIR SDMDSVFRDS TLKGPLWEEV SRKLGEIGYK RSAKKCKEKF  60
ENVYKYHKRT KEGRTGKSEG KTYKFFDQLQ ALENHNQFNN THPPPKSSQP LLPTNPTLVN  120
SSALPSTTVT AAVTTNNISS TTFAPHSFPN NNSMNLFSSP SSSPSSSTAS DEGLEERYKK  180
KRKWKDYFRK LTRQVLAKQE EMQNRFXLQE MSRIANEHDV LVQERSTAAA KDAAVIALLH  240
KLSGHETQSP QTQTQIQKQQ TIKAKNSSSR EIVERMSCSS SSRWPKGEVH ALIRLRTSLD  300
SKYMENGPKA PLWEDISGGM QRLGYNRSAK RCKEKWENIN KYFKKVKESN KQRREDSKTC  360
PYFHELEALY KDKISNNTSF GSFQNNMEPL MVQPEQQWRP PPESNKDNNN ESNEEEEEEE  420
YDDDGVEEEE EDSVGEEEEG LNRYQIVTNK VSSVDTVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14957KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D1B6K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-41AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204388.10.0trihelix transcription factor GT-2
RefseqXP_025657036.20.0trihelix transcription factor GT-2
SwissprotQ391171e-123TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A445CYR40.0A0A445CYR4_ARAHY; Uncharacterized protein
STRINGGLYMA16G28240.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-52Trihelix family protein