PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CRZ51
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 590aa    MW: 64943.1 Da    PI: 6.3454
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CRZ51genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24129230199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++p+ +a+++         ++ +   l+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++s+++
  Araip.CRZ51 129 FAKILTPSDANNGGGFSVPRFCADSIfpaldfnADPPVQ--VLSVTDVHGATWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFM--KNSQGS 222
                  89*********************999*****96545545..79***********************************************..779*** PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Araip.CRZ51 223 LFVGIRRT 230
                  *****995 PP
2Auxin_resp99.74e-33276359183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+ +++FevvY+Pra++s+Fvvk+e ve+a+k  +++GmR+kma+eted+s+ ++ +Gtv++ s  d+  W++S+Wr+L+
  Araip.CRZ51 276 AAELAARTMPFEVVYYPRAGWSDFVVKAEAVEAAMKAGWCPGMRVKMAVETEDASRMTWfQGTVSSASVPDNGPWRGSPWRMLQ 359
                  6889999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-35124231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-28125234IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-20128229No hitNo description
SMARTSM010197.0E-17129231IPR003340B3 DNA binding domain
PfamPF023622.0E-22129229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788129231IPR003340B3 DNA binding domain
PfamPF065071.1E-29276359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MRPSQPRRLP PKAASLDPKI WRACAGASVH IPAVHSRVYY FPQGHLEQAF PPSLHNNHHH  60
HHLNPLIRTL PFVLCRVSSV QFLADPLSDE VFAKLLLSPI PADDRSSSTS EDRPAEEPDS  120
IGGNRVSSFA KILTPSDANN GGGFSVPRFC ADSIFPALDF NADPPVQVLS VTDVHGATWD  180
FRHIYRGTPR RHLLTTGWSK FVNHKKLVAG DSVVFMKNSQ GSLFVGIRRT LRFSAVLKED  240
RDPWLEEEEE EDNSSDPPVF TRDGRGKVTL KAVAEAAELA ARTMPFEVVY YPRAGWSDFV  300
VKAEAVEAAM KAGWCPGMRV KMAVETEDAS RMTWFQGTVS SASVPDNGPW RGSPWRMLQV  360
TWDEPEVLQN AKRISPWQVE LISTTPTLHT VFPPTKKFRA GALSDLEGDP YFPIAGFTNS  420
TMEHLSQTLL GYNTFPAGMQ GARHDLFSPS SFSNFLNDNS HLHMGSSFFG KTTEPMLSTV  480
STELNIGNCQ SGDLSPDSPS SLRSFGPEFT GTNNSNVPKI GSGSFLLFGK IIKPVEVELH  540
DAGCIADDGC KSSTETECID KPVGHSLTYS TLLRLDVESQ QPSQVEACYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-711538018353Auxin response factor 1
4ldy_B1e-711538018353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CRZ51
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150365e-43AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181952.10.0auxin response factor 17
RefseqXP_025682448.10.0auxin response factor 17
SwissprotQ84WU61e-175ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A444X3M60.0A0A444X3M6_ARAHY; Auxin response factor
STRINGXP_007141116.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-150auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]