PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CGZ29
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 519aa    MW: 57863.1 Da    PI: 6.4534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CGZ29genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-174794148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed +lvd+v+++G g+W+++ r  g+ R++k+c++rw ++l
      Araip.CGZ29 47 KGPWTTIEDAILVDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWTNHL 94
                     79*******************************************996 PP
2Myb_DNA-binding49.69e-16100143146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++l+++ + q+G++ W++ a+ ++ gRt++++k++w++
      Araip.CGZ29 100 KGAFSPEEEKLIIEFHSQFGNK-WARMAALLP-GRTDNEIKNYWNT 143
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0234294IPR017930Myb domain
SuperFamilySSF466894.49E-2945141IPR009057Homeodomain-like
SMARTSM007175.7E-134696IPR001005SANT/Myb domain
PfamPF002491.0E-134794IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2248101IPR009057Homeodomain-like
CDDcd001671.22E-104994No hitNo description
PROSITE profilePS5129423.96695149IPR017930Myb domain
SMARTSM007171.6E-1599147IPR001005SANT/Myb domain
PfamPF002491.1E-14100143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-25102148IPR009057Homeodomain-like
CDDcd001672.94E-11102143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MENMNKDAEN DANSFTAMGK CVGDGGNNSG GEDGGGATAT GEVALKKGPW TTIEDAILVD  60
YVTKHGEGNW NAVQRNTGLA RCGKSCRLRW TNHLRPNLKK GAFSPEEEKL IIEFHSQFGN  120
KWARMAALLP GRTDNEIKNY WNTRVKRRQR QGLPLYSDDP NRSITTSTPT ATTVTYLGEN  180
FTNNAPITMF EFIKQSYPHS PSPRHHSPLT SPLQHRASSY SHMLSPLSSP AHSPLSSPAT  240
SLPLSFTFQR PAPLLYNPLS FKRYRSTPSC NPTTSPTMNN PTHLSDIDNG FQFPMQLNSS  300
SFSHFFQNPT LLDLERSGSS LTSSPSNAQS KMQLLSNHIP LSLQTQQMEP LEVNYDIEYN  360
DPNSLSASNR LFGDFLSETQ PSTSGHQILK KRNYLGLDER DNNVFDCCQS FDDSPLSSLY  420
GSSTPVLKQK EEATNLNQSM NEDLSTFLTV VPSIMQDQQN WQYNYATEVS DNVQSSHVII  480
DDNFGFDIKP KPSLFPLSIA TNHNDNRGCY TWDNLSSQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30451485107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CGZ29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973071.10.0transcription factor MYB97-like
TrEMBLA0A445AP330.0A0A445AP33_ARAHY; Uncharacterized protein
STRINGXP_007146493.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.29e-65myb domain protein 101