PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BYF4T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 360aa MW: 40054.4 Da PI: 9.7617 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 225 | 246 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+F+++ L +H + + Araip.BYF4T 225 QCENCGKTFRSSRALGSHRSIC 246 7*****************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 2.5 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.307 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.3E-7 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 79 | 224 | 244 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.01 | 224 | 243 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.683 | 224 | 252 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.07E-5 | 225 | 281 | No hit | No description |
SMART | SM00355 | 0.2 | 259 | 281 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.4E-8 | 259 | 282 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.245 | 259 | 281 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 261 | 281 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MERQKCCKLC SRTFPNGRAL GGHMKAHLAT FPLPPKPPQP PAPPLPSSES SSSFSSFSES 60 EPEDKAALVY GLRENPKKSF RVADPEFSPL AAPLLPPPDS VAVQDRESET ESSKKPTRQR 120 SKRTWRARSI LHNHEDDKEQ LKKKQPKLGF MEHEHEYEAE PVSSVSETSV VEDVAMFLVM 180 LSRDTWSNKD AILVKQEGEV ERSKAGSGNG IKMKKVRVRG KHSRQCENCG KTFRSSRALG 240 SHRSICCDGG RSGASDRIFQ CPFCFKIFGS GQALGGHKRS HLIAMAAPSS SSSTAKNFID 300 LNLPAPLEEQ HEDDLGVVSD TLSSALKRTK YPGKRREVPY NSYRRISQVY DNKVQDMLIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 122 | RQRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BYF4T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020976553.1 | 0.0 | zinc finger protein ZAT1-like | ||||
Refseq | XP_025627683.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A445ES07 | 0.0 | A0A445ES07_ARAHY; Uncharacterized protein | ||||
STRING | AES90901 | 5e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 3e-30 | C2H2-like zinc finger protein |