PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BL2WM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 134aa MW: 15498 Da PI: 9.1122 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 7 | 57 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+ l Lee F+++ ++++++++ LAk+l+L+ rqV vWFqNrRa+ k Araip.BL2WM 7 CITSLTLALLEENFKNHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTK 57 67888999*****************************************98 PP | |||||||
2 | HD-ZIP_I/II | 104 | 1.2e-33 | 9 | 91 | 7 | 90 |
HD-ZIP_I/II 7 skeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ++ ++lLEe+F+++++L++ +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr + Araip.BL2WM 9 TSLTLALLEENFKNHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELR-A 91 5556789**************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.1E-11 | 1 | 63 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.645 | 1 | 59 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 6 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.8E-16 | 7 | 57 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.85E-11 | 8 | 60 | No hit | No description |
SuperFamily | SSF46689 | 1.07E-15 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 34 | 57 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.7E-10 | 59 | 92 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.0E-20 | 59 | 102 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MEDEKACITS LTLALLEENF KNHTTLNQAQ KQALAKQLNL KHRQVEVWFQ NRRARTKLKQ 60 TEVDCEFLKK CCERLTDENL RLKKELQELR AIKAGPTQSP TPPLYIQLLS SKSSPLTICS 120 SCEELLKKTK QENI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 59 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BL2WM |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031172 | 6e-67 | KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193404.1 | 2e-80 | homeobox-leucine zipper protein HOX19 | ||||
Refseq | XP_025644324.1 | 2e-80 | homeobox-leucine zipper protein HOX19 | ||||
Swissprot | A2XE76 | 2e-44 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 2e-44 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A445A2D7 | 4e-79 | A0A445A2D7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G07051.1 | 4e-53 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-34 | HD-ZIP family protein |