PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BE6W6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21898.9 Da PI: 10.3006 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.6e-05 | 40 | 61 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k Fs++ L H++ H Araip.BE6W6 40 QCKFCNKKFSNSQALGGHQNAH 61 8******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.28E-6 | 36 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 38 | 64 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.074 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVPSPDNTSS HGRDCGKLLA PSSNSCKLLK KYPQNKRRLQ CKFCNKKFSN SQALGGHQNA 60 HKLERAAVKR DNILAMASAY SNYLPPFQSN MQNYYSNFSA FSHSSRTLGM QQPQAMIHNR 120 SSTALGPGYL HNILLGNQIM DLQCSRQKEI LTVNLLPQQS PLSLGENMNP NQTNKQQQQP 180 GAGNNKPQGE IDLTLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BE6W6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172365.1 | 1e-143 | zinc finger protein ZAT11-like | ||||
Refseq | XP_025677956.1 | 1e-143 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A444XCY2 | 1e-142 | A0A444XCY2_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16697 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 2e-11 | zinc finger protein 7 |