PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.B91MN

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 303aa MW: 34376.1 Da PI: 7.8219

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.B91MN	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.9e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Araip.B91MN 19 PRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-31	15	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.971	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MATCGREGAV RQYIRSKVPR LRWTPELHRC FVHAIDSLGG HHKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRGDLGRQ GRISSSQHRN QSFEEHDDGC VEEVNDVNNN NNNHNQNYHP 120 CSQSIGKESD SLFGYSNFSP KRARIERNYS ISQNLQCRNQ RTVPYPYSFY DYAYSTQQQQ 180 HQPPHSTVFP MLPPLLGNFL QVTKLNDRET TSEAMTNNNN NNNVLLNINK NNNTEKKARA 240 EEDEDEDVGR ECELSLSLTL PNPSPQRSSN VSSASEITEA AISSSCSTTL KHRINLDLSL 300 SLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.B91MN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098225	1e-109	BT098225.1 Soybean clone JCVI-FLGm-16F9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177422.1	0.0	putative Myb family transcription factor At1g14600
Refseq	XP_025679843.1	0.0	putative Myb family transcription factor At1g14600
TrEMBL	A0A444XVN0	0.0	A0A444XVN0_ARAHY; Uncharacterized protein
STRING	GLYMA20G24290.1	1e-112	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-34	G2-like family protein