PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AJC62
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 617aa    MW: 65209.3 Da    PI: 9.4251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AJC62genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-055476123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  Araip.AJC62 54 FICEVCNKGFQREQNLQLHRRGH 76
                 89*******************88 PP
2zf-C2H211.80.00075130152123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Araip.AJC62 130 WKCDKCSKKYAVQSDWKAHSKTC 152
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.3E-55376IPR022755Zinc finger, double-stranded RNA binding
Gene3DG3DSA:3.30.160.601.6E-55476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525476IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.6E-75476No hitNo description
PROSITE profilePS5015710.995476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035513095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-5118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-7125150No hitNo description
SMARTSM00355150130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAQSSSSASL FGFRGEDQNQ MKEQHSLPPS SSTTSSAPPQ QKKKRNQPGT PSKFICEVCN  60
KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH  120
YSRKHGEKKW KCDKCSKKYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA  180
LAQESARQPP NLNNAIGTHL YGSTNNNMAL GLSQVGMGMG VGVGVGVGVG VGVGPQQIPT  240
AMQESSTDLL RLSGRTGQLD HHMLPPPPSS FRTSHHQPFF MNDHQNFHGH QGLMQLSDLN  300
NNSNNSMDNN SPSGGGGGAN NNSSNNNNNN NNSNLFNLPF LSSNSTNSSN NSFSDQHGNN  360
NNNNEGNNSF FTGAGGSAIM HQTTSSTAPS LFSNSLETSN NNNNSGSISH MSATALLQKA  420
AQMGATTSNS TASLLKSFGA TSTTSAAAKP PHDHHHHLRA ATMVSSAAAA ANYGSIFGSG  480
SEQGNLQDLM NSFATVASAG HSSSMFESGG GSSVGLMAGF DHAYDHSSNS REHKLHGVSI  540
GGGSDGLTRD FLGVGQVVRT MSSGGGGGGG GGGGVSRREQ QQQHCFTLSS MEAERNSNAA  600
PSGQSFGSSG GGGGNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33126194371Zinc finger protein JACKDAW
5b3h_F1e-33126194371Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AJC62
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-127AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175354.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_025674517.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_025674518.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLA0A444XUT80.0A0A444XUT8_ARAHY; Uncharacterized protein
STRINGGLYMA20G24366.20.0(Glycine max)
STRINGXP_007142834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-87indeterminate(ID)-domain 5