PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.AC5JZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 222aa MW: 25412.1 Da PI: 9.2193 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.6 | 1.7e-28 | 51 | 132 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i++r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ s++cp+f++l+ Araip.AC5JZ 51 QWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----SRQCPFFEELH 132 7****************************************************************999986....899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-4 | 48 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.9E-24 | 50 | 133 | No hit | No description |
CDD | cd12203 | 1.85E-28 | 50 | 115 | No hit | No description |
PROSITE profile | PS50090 | 7.654 | 52 | 108 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MFGGEDARAA RLAMVAPPQP QMLNPATSSV ISGEISPTTA GREERVPAQP QWSQQETREF 60 IAIRAELERD FTASKRNKTL WEVVSSKMRE RGFRRSPEQC KCKWKNLVNR YKGKETSDPE 120 HSRQCPFFEE LHAVFTERAR NMQRLHLESE ARSAQTKKGV KRSSGERSSE EYSEDDEEVE 180 DDSEEEKPSR SNARKRKVDK TDKSSKANNP SNTFSNTARN AQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 2e-15 | 52 | 118 | 7 | 73 | DNA binding protein GT-1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.AC5JZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201265.1 | 1e-161 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A444WVB2 | 1e-140 | A0A444WVB2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G35370.2 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-34 | Trihelix family protein |