PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9T2TT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 306aa    MW: 33863.1 Da    PI: 8.4702
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9T2TTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.8e-18230263134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Araip.9T2TT 230 CMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGR 263
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-15224274IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.807224260IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-15227287No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14228261IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.61E-15229276No hitNo description
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16230263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
KDIVQVYIAN MKDCWFLDNN LNGVSDEAFD VVGFFDFPIE DVEDDAVEED WGAQFKQLEE  60
PSLGVFSVSP SGLSDKTENE NPKLGRSIST PVADPARPTY GNTIRNQNVS FNGKRVPKFQ  120
TYSPVSVFES SSSSSVENSN FDLPVIPVKR PRGKRRPLSS FSLLLSVPFV SNSPKGEAND  180
LSESNLQTQA DGKLISSLKK KQRSKDLPLL SDHTEKKGSA LQGSVTHRKC MHCEVTSTPQ  240
WREGPMGPKT LCNACGVRYR SGRLFPEYRP AASPTFVPSL HSNSHRKVIE MRSRTATETL  300
KGSSML
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9T2TT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973446.10.0GATA transcription factor 11 isoform X1
TrEMBLA0A445AAA70.0A0A445AAA7_ARAHY; Uncharacterized protein
STRINGGLYMA12G29730.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-39GATA transcription factor 11